Section I– Microbiology By Dr. Mohammed Ayad
mirabilis, P. penneri, and P. vulgaris “swarm” on blood and chocolate agars. Swarming results in the
in which clumps of cells adhere to one side of the tube.
border; see Figure 1) on CIN agar at 48 hours. However, because most Aeromonas spp. produce similar
Table (4) Colonial Appearance and Characteristics of the Most Commonly Isolated Enterobacteriaceae
XLD Red, yellow, or colorless colonies, with or without black centers (H2S)
Enterobacter spp. MAC LF; may be mucoid
Escherichia coli MAC Most LF, some NLF (some isolates may demonstrate slow or late fermentation);
and generally flat, dry, pink colonies with a surrounding darker pink area of
Klebsiella spp. MAC LF; mucoid
Plesiomonas BAP Shiny, opaque, smooth, nonhemolytic
Section I– Microbiology By Dr. Mohammed Ayad
Proteus spp. MAC NLF; may swarm, depending on the amount of agar in the medium; characteristic
XLD Yellow or colorless, with or without black centers
HE Green, black center as a result of H2S production
Serratia spp. MAC Late LF; S. marcescens may be red pigmented, especially if plate is left at 25°C
Shigella spp. MAC NLF; S. sonnei produces flat colonies with jagged edges
Yersinia spp. MAC NLF; may be colorless to peach
HE, Hektoen enteric agar; LF, lactose fermenter, pink colony; MAC, MacConkey agar; NLF, non–lactose
fermenter, colorless colony; XLD, xylose-lysinedeoxycholate agar.
are sorbitol fermenters; colorless colonies are non–sorbitol fermenters.
In the early decades of the twentieth century, Enterobacteriaceae were identified using more than 50
key tests such as indole, methyl red, Voges-Proskauer, and citrate, known by the acronym IMViC, were
routinely performed to group the most commonly isolated pathogens.
clinical and hospital laboratories in the
Section I– Microbiology By Dr. Mohammed Ayad
were inoculated manually; these were followed by semiautomated and automated systems, the most
sophisticated of which inoculate, incubate, read, and discard
new microorganisms may be misidentified or not identified at all.
RNA (rRNA) sequencing and DNA-DNA
oxidase-positive, gram-negative rods, now has been
included in the family Enterobacteriaceae. Plesiomonas sp. clusters with the genus Proteus in the
penneri, which are negative, from the indole-positive P. vulgaris.
Figure( 2) Red-pigmented Serratia marcescens on MacConkey agar.
Section I– Microbiology By Dr. Mohammed Ayad
Specific Considerations for Identifying Enteric Pathogens
medium, such as 5% sheep blood agar or LIA. Use of sugar-containing media, such as MacConkey or TSI
agars, can cause the organisms to autoagglutinate.
the organism should be prepared and heated to 100°C for 10 minutes to inactivate
Figure( 3) Proteus mirabilis swarming on blood agar (arrow points to swarming edge).
Section I– Microbiology By Dr. Mohammed Ayad
performed in reference laboratories.
isolate positive for O157 STEC should be forwarded to the public health laboratory for additional
epidemiologic analysis. Any specimens or enrichment broths that are positive for Shiga toxin or
using the Widal test are somewhat unreliable, this method is no longer widely used.
immunosorbent assay; these tests are usually performed in reference laboratories.
Antimicrobial susceptibility testing and therapy:
methods and commercial systems have been developed for this purpose.
Section I– Microbiology By Dr. Mohammed Ayad
Standards Institute and (CLSI) has created guidelines (CLISI document M-100 and M100-S23) for the
minimum inhibitory concentration (MIC) and disk diffusion breakpoints for aztreonam, cefotaxime,
confirmatory test in the identification process. In addition, with regard to cases
listed should be reported as resistant.
Mmultidrug-resistant typhoid fever (MDRTF)
inappropriate use of antibiotic therapy.
reduced susceptibility to fluoroquinolones), a third-generation cephalosporin, and any
other antibiotic currently used for treatment.
contacts of a documented S. serotype Typhi carrier.
sulfamethoxazole (children younger than 8 years of age)
Section I– Microbiology By Nada Sajet
Genera and species to be considered
Cronobacter sakazakii (previously Enterobacter sakazakii)
Enterobacter (cancerogenous) taylorae
Escherichia coli (including extraintestinal)
Morganella morganii subsp. morganii
Pantoea agglomerans (previously Enterobacter agglomerans)
Shigella dysenteriae (group A)
Section I– Microbiology By Nada Sajet
Yersinia enterocolitica subsp. enterocolitica
either commonly colonize the human gastrointestinal tract or are most notably associated with human
infections. Although many Enterobacteriaceae that cause human infections are part of our normal
and the clinical significance of such isolates is warranted.
Enterobacteriaceae are catalase positive.
Enterobacteriaceae inhabit a wide variety of niches, including the human gastrointestinal tract, the
humans. This is the only species transmitted from animals by an insect vector (i.e., flea bite).
Section I– Microbiology By Nada Sajet
Table (1-1) Epidemiology of Clinically Relevant Enterobacteriaceae
Organism Habitat (Reservoir) Mode of Transmission
Varies with the type of infection. For
infections, organisms may be endogenous or spread
person to person, especially in the hospital setting.
For gastrointestinal infections, the transmission mode
varies with the strain of E. coli (see Table 20-2); it
may involve fecal-oral spread between humans in
contaminated food or water or consumption of
undercooked beef or unpasteurized milk from
other animals; may also inhabit
Person-to-person spread by fecal-oral route,
in overcrowded areas, group settings (e.g., daycare)
and areas with poor sanitary conditions
Only found in humans at times of
Person-to-person spread by fecal-oral route by
ingestion of food or water contaminated with human
Ingestion of contaminated food products processed
from animals, frequently of poultry or dairy origin.
Direct person-to-person transmission by fecal-oral
route can occur in health care settings when
hand-washing guidelines are not followed
associated with various animals
Uncertain; probably by ingestion of contaminated
or close contact with carrier animal
Gastrointestinal tract of coldblooded
From rodents to humans by the bite of flea vectors or
by ingestion of contaminated animal tissues; during
human epidemics of pneumonic (i.e., respiratory)
Section I– Microbiology By Nada Sajet
Pathogenesis and spectrum of diseases:
pathogens and the intestinal pathogens.
virulence factors, such as endotoxins capable of mediating fatal infections.
disease, the organism can be spread directly from
human to human by inhalation of contaminated
airborne droplets; rarely transmitted by handling or
inhalation of infected animal tissues or fluids
ground squirrel, rock squirrel, and
Consumption of incompletely cooked food products
(especially pork), dairy products such as milk, and,
less commonly, by ingestion of contaminated water
or by contact with infected animals
sheep, and cattle; not part of
Ingestion of organism during contact with infected
animal or from contaminated food or water
Rodents, rabbits, deer, and birds;
part of normal human microbiota
Endogenous or person-to-person spread, especially in
Section I– Microbiology By Nada Sajet
organism may produce life-threatening systemic illness. Furthermore, as the leading cause of
species categorized as “opportunistic” Enterobacteriaceae.
Table (1-2 )Pathogenesis and Spectrum of Disease for Clinically Relevant Enterobacteriaceae
Organism Virulence Factors Spectrum of Disease and Infections
Urinary tract infections, bacteremia, neonatal
nosocomial infections of other various body sites.
cause of gram-negative nosocomial infections.
Pili that permit gastrointestinal
colonization. Heat-labile (LT)
mediate secretion of water and
Traveler’s and childhood diarrhea, characterized by
stools. Transmitted by contaminated food and water.
Virulence factors uncertain, but
the large intestine in a manner
Dysentery (i.e., necrosis, ulceration, and
bowel); usually seen in young children living in
Bundle-forming pilus, intimin,
attachment to mucosal cells of
Diarrhea in infants in developing, low-income
Section I– Microbiology By Nada Sajet
Inflammation and bleeding of the mucosa of the
hemorrhagic colitis); can also lead to hemolyticuremic syndrome,
resulting from toxin-mediated damage to kidneys.
ingestion of undercooked ground beef or raw milk.
Watery diarrhea that in some cases can be prolonged.
transmission is not well understoo
Shigella spp. Several factors involved to
vesicles, intercellular spread,
inflammation. Shiga toxin role
disease is uncertain, but it does
various effects on host cells.
Dysentery defined as acute inflammatory colitis and
characterized by cramps, tenesmus, and bloody,
Infections with S. sonnei may produce only watery
Salmonella serotypes Several factors help protect
intestinal mucosal cells, allow
facilitate dissemination to other
Three general categories of infection are seen:
• Gastroenteritis and diarrhea caused by a wide
that produce infections limited to the mucosa and
gastrointestinal tract. S. serotype Typhimurium and
Enteritidis are the serotypes most commonly
Salmonella gastroenteritis in the United States.
• Bacteremia and extraintestinal infections occur by
Section I– Microbiology By Nada Sajet
the gastrointestinal tract. These infections usually
S. Choleraesuis or S. dublin, although any serotype
• Enteric fever (typhoid fever, or typhoid) is
fever and multisystem involvement, including blood,
liver, and spleen. This life-threatening infection is
caused by S. serotype Typhi; more rarely, S.
Yersinia pestis Multiple factors play a role in
adapt for intracellular survival
capsule, exotoxins, endotoxins,
Two major forms of infection are bubonic plague
plague. Bubonic plague is characterized by high
inflammatory swelling of axilla and groin lymph
characteristic buboes); infection rapidly progresses to
bacteremia that is frequently fatal if untreated.
involves the lungs and is characterized by malaise
signs; the respiratory infection can occur as a
bacteremic spread associated with bubonic plague or
acquired by the airborne route during close contact
pneumonic plague victims; this form of plague is
Enterocolitis characterized by fever, diarrhea, and
can cause acute mesenteric lymphadenitis, which
clinically as appendicitis (i.e., pseudoappendicular
Section I– Microbiology By Nada Sajet
and spread to lymphatic tissue.
Bacteremia can occur with this organism but is
Causes infections similar to those described for Y.
Wide variety of nosocomial infections of the
tract, blood, and several other normally sterile sites;
infect hospitalized and seriously debilitated patients
However,additional infections, including septicemias, meningitis, brain abscesses, and neurologic
encode resistance to ampicillin and first-generation cephalosporins.
Table(3) Biochemical Differentiation of Citrobacter Species
Species Indole ODC Malonate ACID
C. braakii V pos Neg neg v v neg
C. freundii V neg Neg neg neg pos
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