sheep, and cattle; not part of
Ingestion of organism during contact with infected
animal or from contaminated food or water
Rodents, rabbits, deer, and birds;
part of normal human microbiota
Endogenous or person-to-person spread, especially in
Section I– Microbiology By Dr. Mohammed Ayad
organism may produce life-threatening systemic illness. Furthermore, as the leading cause of
species categorized as “opportunistic” Enterobacteriaceae.
Table (1-2 )Pathogenesis and Spectrum of Disease for Clinically Relevant Enterobacteriaceae
Organism Virulence Factors Spectrum of Disease and Infections
Urinary tract infections, bacteremia, neonatal
nosocomial infections of other various body sites.
cause of gram-negative nosocomial infections.
Pili that permit gastrointestinal
colonization. Heat-labile (LT)
mediate secretion of water and
Traveler’s and childhood diarrhea, characterized by
stools. Transmitted by contaminated food and water.
Virulence factors uncertain, but
the large intestine in a manner
Dysentery (i.e., necrosis, ulceration, and
bowel); usually seen in young children living in
Bundle-forming pilus, intimin,
attachment to mucosal cells of
Diarrhea in infants in developing, low-income
Section I– Microbiology By Dr. Mohammed Ayad
Inflammation and bleeding of the mucosa of the
hemorrhagic colitis); can also lead to hemolyticuremic syndrome,
resulting from toxin-mediated damage to kidneys.
ingestion of undercooked ground beef or raw milk.
Watery diarrhea that in some cases can be prolonged.
transmission is not well understoo
Shigella spp. Several factors involved to
vesicles, intercellular spread,
inflammation. Shiga toxin role
disease is uncertain, but it does
various effects on host cells.
Dysentery defined as acute inflammatory colitis and
characterized by cramps, tenesmus, and bloody,
Infections with S. sonnei may produce only watery
Salmonella serotypes Several factors help protect
intestinal mucosal cells, allow
facilitate dissemination to other
Three general categories of infection are seen:
• Gastroenteritis and diarrhea caused by a wide
that produce infections limited to the mucosa and
gastrointestinal tract. S. serotype Typhimurium and
Enteritidis are the serotypes most commonly
Salmonella gastroenteritis in the United States.
Section I– Microbiology By Dr. Mohammed Ayad
tissues. • Bacteremia and extraintestinal infections occur by
the gastrointestinal tract. These infections usually
S. Choleraesuis or S. dublin, although any serotype
• Enteric fever (typhoid fever, or typhoid) is
fever and multisystem involvement, including blood,
liver, and spleen. This life-threatening infection is
caused by S. serotype Typhi; more rarely, S.
Yersinia pestis Multiple factors play a role in
adapt for intracellular survival
capsule, exotoxins, endotoxins,
Two major forms of infection are bubonic plague
plague. Bubonic plague is characterized by high
inflammatory swelling of axilla and groin lymph
characteristic buboes); infection rapidly progresses to
bacteremia that is frequently fatal if untreated.
involves the lungs and is characterized by malaise
signs; the respiratory infection can occur as a
bacteremic spread associated with bubonic plague or
acquired by the airborne route during close contact
pneumonic plague victims; this form of plague is
Enterocolitis characterized by fever, diarrhea, and
can cause acute mesenteric lymphadenitis, which
Section I– Microbiology By Dr. Mohammed Ayad
and spread to lymphatic tissue.
clinically as appendicitis (i.e., pseudoappendicular
Bacteremia can occur with this organism but is
Causes infections similar to those described for Y.
Wide variety of nosocomial infections of the
tract, blood, and several other normally sterile sites;
infect hospitalized and seriously debilitated patients
However,additional infections, including septicemias, meningitis, brain abscesses, and neurologic
encode resistance to ampicillin and first-generation cephalosporins.
Table(3) Biochemical Differentiation of Citrobacter Species
Species Indole ODC Malonate ACID
C. braakii v pos neg Neg v v neg
C. freundii v neg neg Neg neg pos v
C. koseri pos pos pos Pos v neg v
Section I– Microbiology By Dr. Mohammed Ayad
< 15%; ODC, ornithine decarboxylase; pos, positive ≥ 85%; V, variable 15% to 84%.
(E. aerogenes, E. cloacae, E. gergoviae, E. amnigenus, E. taylorae)
antibiotic susceptibility testing to identify appropriate therapeutic options.
Escherichia coli (UPEC, MNEC, ETEC, EIEC, EAEC, EPEC and EHEC)
and meningitis/sepsis–associated E. coli (MNEC).
Section I– Microbiology By Dr. Mohammed Ayad
mortality. Eighty percent of MNEC strains test positive for the K1 antigen.
via membrane-bound vacuoles in microvascular endothelial cells.
As mentioned, intestinal E. coli may be classified as enterohemorrhagic (or serotoxigenic [STEC], or
as the cause of hemorrhagic diarrhea, colitis, and hemolytic uremic syndrome (HUS). HUS, which is
characterized by a hemolytic anemia and low platelet
Although more than 150 non-O157 serotypes have been associated with diarrhea or HUS, the two most
enterotoxin (LT) and a heat-stable enterotoxin (ST) capable of causing mild watery diarrhea. ETEC is
uncommon in the United States but is an important
pathogen in young children in developing countries.
cells. Inflammation is accompanied by fever and abdominal pain.
Ewingella americana has been identified from blood and wound isolates. The organism is biochemically
inactive, and currently no recommended identification scheme has been identified.
disease (e.g., malignancies) or after surgery or trauma.
Section I– Microbiology By Dr. Mohammed Ayad
Klebsiella spp. (K. pneumoniae, K. oxytoca)
have developed a self-limiting antibiotic-associated
community-acquired pyogenic liver abscess worldwide.
Morganella spp. (M. morganii, M. psychrotolerans)
specimens collected from patients with symptoms of diarrhea.
soil or from contaminated fluids (i.e., IV fluids).
in children, but its role in intestinal infections is
these organisms. Aeromonas spp. are
DNase positive and Plesiomonas organisms are DNase negative.
Section I– Microbiology By Dr. Mohammed Ayad
rettgeri, P. stuartii, P. rustigianii)
lactose fermenters capable of deaminating phenylalanine.
Because of its motility, the organism is often associated
been associated with diarrhea and sepsis.
diarrhea. These organisms may be associated with nosocomial outbreaks.
Serratia spp. (S. marcescens, S. liquefaciens group)
as urinary catheters, respirators intravenous fluids, and other
resistance to other cephalosporins, penicillins, carbapenems, and aminoglycosides.
Section I– Microbiology By Dr. Mohammed Ayad
Shigella spp. (S. dysenteriae, S. flexneri, S. boydii, S. sonnei)
Shigella spp. are nonmotile; lysine decarboxylase–negative;
citrate-, malonate-, and H2S-negative; non–lactose fermenting; gram-negative rods that grow well on
somatic LPS O antigen. After presumptive identification of a suspected
reference laboratory for further testing.
Yersinia spp. (Y. pestis, Y. enterocolitica,
Y. frederiksenii, Y. intermedia, Y. pseudotuberculosis)
the lipid A-oligosaccharide core and the complete O-polysaccharide (Y. pseudotuberculosis and Y.
addition, epidemiologic studies often include pulsed-field gel electrophoresis (PFGE) studies.
Yokenella regensburgei. These organisms are typically opportunistic pathogens
found in environmental sources.
Specimen collection and transport
Section I– Microbiology By Dr. Mohammed Ayad
presumptive identification of Enterobacteriaceae.
and other body fluids, is critical and may assist the physician in prescribing appropriate therapy.
Wayson stain; this is a key characteristic for rapid diagnosis of
mononuclear endothelial cells; this pathognomonic entity is known as a Donovan body, named after the
physician who first visualized the organism in such a lesion.
(XLD) agar, and Salmonella-Shigella (SS) agar, are commonly used to cultivate enteric pathogens from
broths, all support the growth of Enterobacteriaceae.
Section I– Microbiology By Dr. Mohammed Ayad
Incubation Conditions and Duration
HE,XLD) should be incubated only in ambient air. Unlike
commonly isolated Enterobacteriaceae on MacConkey, HE, and XLD agars.
Figure( 1) Bull’s-eye colony of Yersinia enterocolitica on cefsulodin-irgasan-novobiocin (CIN) agar
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