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interactions with the patient’s current antiretroviral regimen (see Table 76-6). In

addition, any change to the current antiretroviral regimen should also be checked

against the patient’s current medication list.

Altered bioavailability: Patients with advanced HIV infection may have unreliable

absorption of many medications because of severe diarrhea, anorexia, weight loss,

wasting, and gastric achlorhydria. As a result, the bioavailability of some agents,

especially certain PIs that require specific dietary requirements, may be affected

(Table 76-3). Any changes in dietary habits or bowel function should be carefully

assessed in light of the potential impact on the antiretroviral regimen.

Antiretroviral drug histories and resistance testing: The most useful information to

guide the choice of alternative regimens is a detailed drug history, in conjunction

with appropriate resistance testing. Among patients with extensive prior

antiretroviral use, it is critical to identify previously failed regimens and

determine the precise cause of the failures. In an experienced patient who has

taken many different regimens over a lifetime, the number of remaining viable

agents and regimens may be limited. Therefore, it is important to determine

whether prior regimens truly failed for virologic reasons or some other cause (e.g.,

regimen intolerability or an inadequate trial period). In addition, detailed

knowledge of regimen intolerabilities and which agent(s) caused the adverse event

will help in the selection of a new appropriate regimen. In some situations, the

offending agent may be reinitiated if the adverse event was minimal or can be

appropriately managed.

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RESISTANCE, VIRAL GENOTYPING,

PHENOTYPING, AND VIRAL FITNESS

CASE 76-2, QUESTION 2: Will viral genotyping and phenotyping assist in selecting an appropriate

therapeutic regimen for H.G.? What are these tests? What are their limitations and when should they be used?

What is viral fitness, and does it have a role in clinical decision making?

Viral genotyping and phenotyping reveal resistance patterns to antiretroviral

agents. Genotyping evaluates mutations in the virus’s genetic material, whereas

phenotyping assesses the ability of the virus to grow in the presence of increasing

concentrations of antiretroviral agents. The three potential causes for the

development of resistance are as follows.

Initial infection with a resistant isolate

111–113

Natural selection of a resistant isolate as a consequence of inefficient, errorsusceptible viral replication

35

3. Generation of resistant isolates via selective pressures from antiretroviral

therapies that do not fully suppress viral replication

3

,

4

Mutations are generated when naturally occurring amino acids in the HIV genome

are replaced with alternative amino acids. For example, resistance to 3TC occurs

when the amino acid methionine (M) is replaced by valine (V) at the 184th amino

acid in the protein chain.

114

,

115 This mutation is subsequently referred to as an M184V

mutation. These amino acid substitutions change the proteins that are produced and

may alter the shape, size, or charge of the viral enzyme’s substrate or primer.

115

Subsequently, antiretroviral drug binding to the active site is decreased, affinity for

natural substrates is increased, or there is an increased removal of the antiretroviral

agent from the enzyme by the virus (known as pyrophosphorylation).

113 Whether a

mutation results in a clinically resistant, less viable, or indifferent isolate depends on

which amino acid(s) is replaced. In addition, certain mutations or combination of

mutations have been shown to produce viral isolates that display increased

sensitivity to various antiretroviral agents (known as hypersusceptibility).

Alterations to certain key amino acids can also result in cross-resistance between

various antiretrovirals.

4

,

114

Key enzymes have been extensively studied with regard to their potential for

development of resistance: reverse transcriptase (RT), protease, and more recently,

integrase. Replication by the RT enzyme is highly susceptible to errors. Given that

the HIV genome is approximately 10,000 nucleotides in length and that mutations via

the RT enzyme occur approximately once in every 10,000 nucleotides copied, it has

been estimated that a mutation occurs with every viral replication cycle. With up to

10 billion particles of virus being produced per day, the potential exists for 1,000 to

10,000 mutations occurring at each site in the HIV genome every day.

35 Key

mutations to the antiretroviral agents are updated periodically by expert panels of

clinicians.

4

Over time, countless viral subpopulations known as “quasi-species” develop. In

any given host, at any given time, many different quasi-species can exist. In addition,

within any compartment of the body (e.g., CNS, testes, lymph nodes), many different

quasi-species can also exist. Because these mutant strains represent only a small

number of isolates in the total viral population, they must have some replicative

disadvantage when compared with the “wild-type” virus.

114 Under selective

pressures from antiretroviral therapies, however, these mutant isolates can replicate.

For example, if wild-type viral replication is inhibited by an antiretroviral regimen,

and if any one viral strain of the quasi-species is more fit for growth in the presence

of that regimen, then the viral mutant will have a competitive advantage.

114

It should

be recognized that for resistance to develop, viral replication must occur. When viral

replication is completely inhibited, the development of resistant isolates is unlikely.

Genotypic analysis involves sequencing the viral genetic material via PCR

amplification. Mutations are identified by analysis of key sequences of the RT or

protease enzymes. These tests can be rapidly processed; however, they detect

mutations present only in more than 25% of all HIV isolates in the body and can only

reliably detect resistance patterns in samples with HIV RNA greater than 1,000

copies/mL. Because pressures from antiretroviral therapies select resistant isolates,

these tests may not provide information regarding rare, yet potentially clinically

significant, isolates.

3

,

4

Phenotypic analysis involves growing virus in the presence of various

concentrations of drug and then determining viral susceptibilities (e.g., half-maximal

inhibitory concentration [IC50

]). Phenotyping is limited because it evaluates only one

viral isolate at a time and could fail to identify other clinically relevant isolates.

3

One other measure available to clinicians is “viral fitness” or “replication

capacity.” The genetic changes that occur in a virus to become resistant to

antiretroviral therapy often impair the virus’ ability to replicate.

116

,

117 This measure

is called “fitness” and is quantified as replication capacity during phenotypic

evaluation. During amplification of the virus before the phenotype is measured, the

replication capacity of the virus is evaluated and compared to a reference wild-type,

drug-sensitive virus. A virus with normal fitness has a replication capacity between

70% and 120% of the reference viral strain; isolates with values less than 70% are

considered to be less fit than wild-type virus. In general, the more mutations that

occur to the virus, the more compromised the virus becomes, and the lower the

fitness (although, in some situations, the interplay between mutations can result in a

viral isolate that is relatively fit). Recent data have shown that, despite persistent

viral replication, unfit viruses may not cause the same degree of immune destruction

as fit viruses.

115 This finding is important for patients with limited treatment options

because it may allow for continuation of a HAART regimen that is not completely

suppressive, but that produces an unfit virus, with less T-cell depletion.

As with all clinical decisions made for those who are HIV infected, careful

assessment of the results in combination with the treatment history are essential for

proper clinical decision making. Consultation with an expert in antiretroviral drug

resistance patterns is highly recommended.

Given H.G.’s extensive antiretroviral drug history and his current failure, a

genotype or phenotype will likely provide some insights into potential therapeutic

options.

SPECIAL CIRCUMSTANCES

Poor CD4 Cell Recovery

CASE 76-2, QUESTION 3: H.G. was started on a regimen of tenofovir alafenamide, emtricitabine,

dolutegravir, and darunavir boosted with ritonavir. During the following 6 months, H.G.’s T-cell counts

increased to 325 cells/μL and his viral load value declined to 5,000 copies/mL. At the last two clinic visits,

H.G.’s viral load (copies/mL) and CD4 counts (cells/μL) were 2,000/275 and less than 20/225, respectively.

H.G. reports no new clinical complaints or adverse drug events. In addition, H.G. states that he has been

compliant with therapy. Are changes to therapy necessary?

In most cases, declines in viral load result in increases in CD4 cell counts;

however, in some cases, CD4 cells fail to recover with

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viral load suppression.

5

In this situation, it may be wise to continue current

treatment and monitor the patient closely. Adding an additional drug to intensify the

regimen or changing to a different ART regimen does not consistently increase the

CD4 cell count and is not recommended.

3

Therapeutic Drug Monitoring

Pharmacokinetic evaluations of various antiretrovirals have shown interpatient

variability in drug exposures among cohorts of patients taking the same dose of drug

under the same conditions.

3

,

117–120 Many factors contribute to interpatient variability

in drug exposure, such as pharmacogenetics, environment, different physiologic

conditions, regimen adherence, and drug interactions. For most antiretrovirals, a drug

exposure–response relationship exists (e.g., the higher the exposure, the faster and

more prolonged the viral suppression). In addition, most antiretrovirals also have

well-defined exposure–toxicity relationships.

Therapeutic drug monitoring (TDM) is currently recommended for selected

clinical situations.

3

,

119 For patients with uncharacterized drug interactions and those

with impairments in gastrointestinal, hepatic, or renal function, drug concentrations

may help identify low or high exposure that can be corrected with a dosage

adjustment. TDM may also be useful for assuring that a novel antiretroviral

combination or dose does not have any unpredictable adverse drug interactions. In

treatment-experienced patients, knowledge of drug exposure with viral susceptibility

may assist in designing an optimal dosage regimen. Conversely, patients experiencing

toxicities thought to be concentration-dependent (e.g., neuropsychiatric effects of

efavirenz) may benefit from TDM. Monitoring adherence and evaluating

pharmacokinetics in special populations, such as pregnant women or pediatric

patients, are additional indications for TDM.

Pharmacology experts currently recommend obtaining trough concentrations

immediately before the next antiretroviral dose. For efavirenz (which is usually taken

in the evening), samples obtained 12 hours post-dose will closely reflect the

concentration at 24 hours post-dose because of its long half-life. Many factors can

affect the trough values of various antiretroviral agents. For proper interpretation of

the concentrations, patients should provide a dosing history from the last several

days, a list of concomitantly administered drugs to screen for interactions, and the

exact time the last dose was taken. The exact time the TDM sample was collected

should also be recorded. Another factor that can affect interpretation of drug

concentrations over time is intrapatient variability. Outside of a clinical study, where

patients take their medications under conditions that vary from day to day, the

concentrations could be highly variable at clinic visits over time, and several

samples might be required to determine trends in the drug exposure before making a

dose adjustment.Finally, to minimize laboratory variability and error in measuring

these concentrations, it is also recommended that a laboratory that routinely measures

antiretrovirals and participates in both internal and external quality control programs

be used. A list of such laboratories can be obtained from the Clinical Pharmacology

Quality Assurance and Quality Control Program

(https://www.fstrf.org/apps/cfmx/apps/cpqa/cpqaDocs/public/index.html).

Drug Interactions

CASE 76-3

QUESTION 1: J.F. is a 37-year-old HIV positive man who has been taking emtricitabine, tenofovir disoproxil

fumarate, and darunavir boosted with ritonavir for the past 4 years. His most recent lipid panel showed

markedly elevated triglycerides, LDL, and total cholesterol. What needs to be considered when starting a lipid

lowering medication for J.F.?

Drug interactions are very common with antiretrovirals and need to be considered

when changing HIV-related or non-related drug regimens. In this case, ritonavir will

significantly increase the concentrations of HMG-CoA reductase inhibitors that are

metabolized by CYP3A4 through inhibition of the CYP3A4 isoenzyme.

3

If increased

concentrations of the HMG-CoA reductase inhibitor could put J.F. at risk for myalgia

and rhabdomyolysis. J.F.’s lipids require treatment with an HMG-CoA reductase

inhibitor, one that is only partially metabolized by CYP3A4 or metabolized by

another pathway should be considered. Simvastatin and lovastatin are

contraindicated in combination with ritonavir, but pravastatin, pitavastatin,

rosuvastatin, and atorvastatin can be used at reduced doses.

3 The DHHS HIV adult

treatment guidelines have extensive tables outlining specific drug interactions and

recommendations for concomitant use of medications with the antiretrovirals.

3 Table

76-6 gives the general metabolism and transport effects of each of the classes of

antiretrovirals and gives an idea of the drug interaction potential of each class.

Pregnancy and Breast-Feeding

CASE 76-4

QUESTION 1: T.D. is a 32-year-old woman infected with HIV, whose antiretroviral therapy includes the

combination tablet dolutegravir/abacavir/lamivudine once daily. Her virus is fully suppressed and her CD4 cells

count is 786/μL. She has had a positive home pregnancy test result. Is her current antiretroviral regimen

appropriate for use during pregnancy and for prevention of mother-to-child transmission?

The current perinatal HIV guidelines

121

recommend that women receiving and

tolerating a currently suppressive regimen when they become pregnant continue on

that regimen. The guidelines state that “In general, the same regimens as

recommended for treatment of non-pregnant adults should be used in pregnant women

unless there are known adverse effects for women, fetuses, or infants that outweigh

benefits.” Efavirenz is the only antiretroviral that is currently pregnancy category D

and is not recommended during the first 8 weeks of pregnancy. It has been shown to

be teratogenic in animal studies, particularly in the first trimester of pregnancy, and

retrospective case reports of neural tube defects in humans have been

documented.

122–125 Perinatal transmission prevention guidelines recommend

abacavir/lamivudine, emtricitabine/tenofovir disoproxil fumarate or lamivudine with

tenofovir disoproxil fumarate as first-line NRTIs for HAART initiation in pregnancy.

Atazanavir/ritonavir and daruanvir/ritonavir are the recommended PIs for initiation

in pregnancy, and raltegravir is the first integrase inhibitor to be considered

preferred for initiation in pregnancy. Alternative agents for initiation in pregnancy

include zidovudine/lamivudine, lopinavir/ritonavir, efavirenz as long as it is initiated

after 8 weeks of pregnancy, and rilpivirine.

120 Many of the pregnancy

recommendations are based on those drugs which have the most safety and efficacy

data available during pregnancy (both animal and human).

122

In women who have a viral load persistently greater than 1,000 copies/mL, it is

recommended that a planned 38-week cesarean section be performed to reduce the

risk of mother-to-child transmission. In women with a viral load less than 1,000

copies/mL, there is little evidence to show that cesarean section decreases

transmission rates compared to vaginal delivery. In this case, the decision is made at

the discretion of the physician in consultation with the mother. Additionally, if the

mother’s viral load is >1,000 copies/mL or unknown at the time of delivery, it is

recommended that intravenous zidovudine be administered to the mother at 2 mg/kg

intravenously (IV) for 1 hour at the onset of labor, then given as a continuous infusion

of 1 mg/kg/hour during the intrapartum period (during labor and postpartum). Once

delivered, it

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is recommended that oral zidovudine at 2 mg/kg every 6 hours be started in all

HIV-exposed infants immediately after birth and continued for 6 weeks. It is

recommended that the infant undergo diagnostic virologic testing using either HIV

DNA PCR or RNA virologic assays at a minimum at ages 14 to 21 days, 1 to 2

months, and 4 to 6 months. Antibody testing should not be performed on the infant

because maternal HIV antibody crosses the placenta and will be detectable in all

HIV-exposed infants up to 18 months of age.

122

It is not recommended that HIV-positive women breast-feed their children in

resource-rich settings where clean water and formula are reasonably available. The

risk of transmission from breast-feeding is consistently higher than formula feeding

even with the use of antiretroviral prophylaxis.

122

,

126

Since J.F. is on a fully suppressive ARV regimen that she is tolerating, the

guidelines recommend that she continue on her current regimen. If she continues to

remain undetectable throughout her pregnancy, the decision whether to have a

cesarean or a vaginal delivery will be at the discretion of J.F. and her physician.

Pre-Exposure Prophylaxis

CASE 76-5

QUESTION 1: F.C is a 22-year-old, HIV negative, healthy male with multiple male sex partners. He reports

using condoms most of the time, but would like additional protection against the acquisition of HIV. What

prevention methods can be offered to F.C.?

Pre-exposure prophylaxis (PrEP) is the use of antiretrovirals in HIV-uninfected

individuals to prevent HIV infection. The fixed dose combination of emtricitabine

200 mg /tenofovir disoproxil fumarate 300 mg has been FDA approved for use as

PrEP in HIV-uninfected individuals at high risk of HIV infection.

127 The Clinical

Practice Guidelines for Preexposure Prophylaxis for HIV Prevention in the United

States recommend PrEP as one prevention option for sexually active adult men who

have sex with men, adult heterosexually active men and women, and adult injection

drug users at substantial risk of HIV acquisition.

128 Additionally, the guidelines

recommended that PrEP be discussed with HIV-uninfected heterosexual women and

men whose partners are HIV infected as one of several options to protect the

uninfected partner during conception and pregnancy. HIV testing should be done

immediately before emtricitabine/tenofovir disoproxil fumarate is prescribed for

PrEP and every 3 months while on emtricitabine/tenofovir disoproxil fumarate. If a

patient is found to be HIV infected, emtricitabine/tenofovir disoproxil fumarate

should immediately be stopped to avoid the development of resistance to

emtricitabine and tenofovir. PrEP should always be provided in conjunction with

behavioral risk reduction support and medication adherence counseling. In addition

to regular HIV testing and risk reduction counseling, renal function testing should be

performed at baseline, 3 months, and then every 6 months thereafter and sexually

transmitted infections (STIs) should be screened for at baseline and every 6

months.

128

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